Nextflow workflow report

[high_fourier] (resumed run)

Workflow execution completed successfully. One or more tasks reported an error condition.
Run times
24-May-2025 17:47:01 - 25-May-2025 00:08:33 (duration: 6h 21m 32s)
  333 succeeded  
  343 cached  
  2 ignored  
  7 failed  
Nextflow command
nextflow run nf-core/sarek -r 3.5.1 -resume --step mapping --input /mnt/beegfs2/home/edgars02/samplesheet.csv -profile singularity --genome GATK.GRCh37 -with-report -c /mnt/beegfs2/home/edgars02/RG/batch11/nextflow_sarek_GE.config --tools haplotypecaller,deepvariant,strelka --outdir compare_output --igenomes_base /home_beegfs/groups/bmc/references/igenomes --igenomes_ignore=false
CPU-Hours
1'772.0 (17.3% cached, 0% failed)
Launch directory
/mnt/beegfs2/home/edgars02
Work directory
/mnt/beegfs2/home/edgars02/work
Project directory
/home_beegfs/edgars02/.nextflow/assets/nf-core/sarek
Script name
main.nf
Script ID
3954909713023f4328e976337e6e2cb9
Workflow session
570f9f85-0d3d-4693-b2d7-fc26de42f843
Workflow repository
https://github.com/nf-core/sarek, revision 3.5.1 (commit hash 5fe5cdff171e3baed603b3990cab7f7fd3fcb992)
Workflow profile
singularity
Nextflow version
version 24.10.0, build 5928 (27-10-2024 18:36 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)